ETH Zurich is seeking a Bioinformatician (80–100%) to join the Institute of Microbiology, embedded in the Microbiome Research Lab. This fixed-term position is based in Zurich, Switzerland, and applications are reviewed on a rolling basis until filled.
The role offers a unique opportunity to work at the intersection of computational biology, microbiome science, and collaborative infrastructure development, within one of Europe’s most visible microbiome research networks.
Research Environment and Scientific Context
The position is closely linked to the NCCR Microbiomes, a nationwide and interdisciplinary research programme in Switzerland. The NCCR Microbiomes brings together experimental and computational scientists to understand and engineer the structure, function, and dynamics of microbiomes across biological and environmental systems.
Several research groups at ETH Zurich’s Institute of Microbiology contribute to this initiative. The Bioinformatician will act as a central connector, supporting collaborative projects and enabling efficient, reproducible, and sustainable microbiome research.
Role Overview
The Bioinformatician will support multiple PhD students, postdoctoral researchers, and research groups, contributing to both individual research projects and institute-wide bioinformatics activities.
Responsibilities will be adapted to the candidate’s experience level, making this position suitable for both recent MSc graduates and experienced PhD-level bioinformaticians.
Key Responsibilities
Research and Data Analysis
- Support and advise researchers on bioinformatics, biostatistics, and modeling approaches
- Analyze, integrate, and visualize multi-omics datasets, including:
- Genomics
- Metagenomics
- Metatranscriptomics
- Proteomics
- Metabolomics
- Imaging data
- Collaborate on study design, data interpretation, and reproducible computational workflows
Computational Workflows and Infrastructure
- Develop and maintain reproducible bioinformatics pipelines
- Support research data management, including:
- Data organization
- Documentation
- Storage and submission to public repositories
- Contribute to the maintenance and development of shared computational and IT infrastructure
- Work closely with IT staff and senior bioinformaticians on sustainable infrastructure solutions
Training and Community Support
- Provide individual bioinformatics consultations
- Organize and support training sessions and workshops
- Mentor researchers in computational biology and data analysis
- More experienced candidates may lead training initiatives or method development projects
Candidate Profile
Required Background
Applications are welcome from candidates with a background in:
- Bioinformatics
- Computational Biology
- Computer Science
- Related quantitative disciplines
The successful candidate will demonstrate:
- Strong experience analyzing biological or omics data
- Excellent organizational skills and ability to manage multiple projects
- Ability to work both independently and collaboratively in interdisciplinary teams
Technical Skills
- Programming experience in one or more of:
- Python
- R
- Bash
- Experience with omics data analysis, especially genomics or metagenomics
- Familiarity with Linux-based environments
- Knowledge of reproducible research practices, including:
- Workflow management systems
- Version control (e.g., Git)
Additional Advantages (Depending on Experience)
- Experience with:
- High-performance computing (HPC)
- Data submission to public repositories
- Maintaining bioinformatics pipelines or software environments
- Experience in training or mentoring students and researchers
- Initiative in developing new tools, methods, or workflows
What ETH Zurich Offers
- A stimulating research environment at a world-leading university
- Integration into the NCCR Microbiomes, a highly visible international research network
- Access to state-of-the-art computational infrastructure
- A collaborative, inclusive, and interdisciplinary workplace
- Professional development and career advancement opportunities
- Support for participation in conferences, workshops, and training
- Competitive salary and benefits according to ETH Zurich regulations
- Flexible working arrangements supporting work–life balance
Diversity, Inclusion, and Sustainability
ETH Zurich is committed to equality of opportunity, diversity, and inclusion. The university fosters a respectful and supportive working culture and actively works toward a climate-neutral future.
Application Process
Applications must be submitted online only via APPLY NOW. Applications via email or post will not be considered.
Required Documents
- Cover letter outlining:
- Motivation for the position
- Relevant experience and interests
- Curriculum vitae (CV) including contact details of at least two references
📌 Applications are reviewed on a rolling basis until the position is filled.
Contact Information
For questions about the position (no applications):
- Prof. Shinichi Sunagawa – ssunagawa@ethz.ch
- Dr. Hans-Joachim Ruscheweyh – hansr@ethz.ch
- Dr. Anna Sintsova – ansintsova@biol.ethz.ch
Frequently Asked Questions (FAQ)
Is this position suitable for MSc graduates?
Yes. The role is open to recent MSc graduates as well as PhD-level candidates, with responsibilities adapted to experience.
Is this a research or service role?
It is a hybrid role combining hands-on research support, method development, and institute-wide bioinformatics infrastructure support.
What data types will I work with?
Primarily multi-omics data, including metagenomics and metatranscriptomics, with opportunities to work on proteomics, metabolomics, and imaging data.
Is the contract permanent?
The position is initially offered for one year, with annual extensions depending on funding and project duration.
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